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PEC Original Annotations
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Essentiality
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Class
|
non-essential
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References (PMID)
|
|
|
Deletion
|
DE(araA-leu)7697
,
OCR30
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
setA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
setA
Search strains by all related name:
setA b0070 ECK0072 JW0069 yabM
|
General information (Go to Linear View: )
|
|
Gene Name
|
setA
|
|
Alternative name
|
b0070,ECK0072,JW0069,yabM
|
|
Location, Length
|
77,621 - 78,799
(
+
)
;
1.67
min
;
1179
(bp) ,
392
(aa)
|
|
Product
|
broad specificity sugar efflux system
|
|
Operon Name
|
sgrST-setA
|
|
Note
|
GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane;GO_function: GO:0015543 - lactose/glucose efflux transporter activity; GO_process: GO:0016052 - carbohydrate catabolic process
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( setA )
GO:0005351
;
sugar:hydrogen ion symporter activity ( setA )
GO:0005886
;
plasma membrane ( setA )
GO:0006810
;
transport ( setA )
GO:0008643
;
carbohydrate transport ( setA )
GO:0015542
;
sugar efflux transmembrane transporter activity ( setA )
GO:0016020
;
membrane ( setA )
GO:0016021
;
integral to membrane ( setA )
|
|
PID
|
48994875
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
SETA_ECOLI
(
P31675
;
P75639
)
|
|
- Protein name
|
Sugar efflux transporter A.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=setA; OrderedLocusNames=b0070;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
setA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Sugar efflux transporter A
|
|
PSI-BLAST
|
High-affinity glucose transporter SNF3
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
broad specificity sugar efflux system [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MIWIMTMARR MNGVYAAFML VAFMMGVAGA LQAPTLSLFL SREVGAQPFW IGLFYTVNAI AGIGVSLWLA
0071 KRSDSQGDRR KLIIFCCLMA IGNALLFAFN RHYLTLITCG VLLASLANTA MPQLFALARE YADNSAREVV
0141 MFSSVMRAQL SLAWVIGPPL AFMLALNYGF TVMFSIAAGI FTLSLVLIAF MLPSVARVEL PSENALSMQG
0211 GWQDSNVRML FVASTLMWTC NTMYIIDMPL WISSELGLPD KLAGFLMGTA AGLEIPAMIL AGYYVKRYGK
0281 RRMMVIAVAA GVLFYTGLIF FNSRMALMTL QLFNAVFIGI VAGIGMLWFQ DLMPGRAGAA TTLFTNSIST
0351 GVILAGVIQG AIAQSWGHFA VYWVIAVISV VALFLTAKVK DV
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTGCCTGCAT CATGTGTGAC TGAGTATTGG
-070 TGTAAAATCA CCCGCCAGCA GATTATACCT GCTGGTTTTT TTTATTCTCG CCGCGCTAAA AAGGGAACGT
0001 atgatctgga taatgacgat ggctcgccgt atgaacggtg tttacgcggc atttatgctg gtcgctttta
0071 tgatgggggt ggccggggcg ctacaggctc ctacattgag cttatttctg agtcgtgagg ttggcgcgca
0141 acctttctgg atcggcctct tttatacggt gaatgctatt gctgggatcg gcgtaagcct ctggttggca
0211 aaacgttctg acagtcaggg cgatcggcga aaactgatta tattttgctg tttgatggct atcggcaatg
0281 cgctattgtt tgcatttaat cgtcattatc tgacgcttat cacctgtggt gtgcttctgg catctctggc
0351 caatacggca atgccacagt tatttgctct ggcgcgggaa tatgcggata actcggcgcg agaagtggtg
0421 atgtttagct cggtgatgcg tgcgcagctt tctctggcat gggttatcgg tccaccgttg gcctttatgc
0491 tggcgttgaa ttacggcttt acggtgatgt tttcgattgc cgccgggata ttcacactca gtctggtatt
0561 gattgcattt atgcttccgt ctgtggcgcg ggtagaactg ccgtcggaaa atgctttatc aatgcaaggt
0631 ggctggcagg atagtaacgt acggatgtta tttgtcgcct cgacgttaat gtggacctgc aacaccatgt
0701 acattattga tatgccgttg tggatcagta gcgagttagg attgccagac aaactggcgg gtttcctgat
0771 ggggacggca gctggactgg aaataccagc aatgattctg gctggctact atgtcaaacg ttatggtaag
0841 cggcgaatga tggtcatagc agtggcggca ggagtactgt tttacaccgg attgattttc tttaatagcc
0911 gtatggcgtt gatgacgctg caacttttta acgctgtatt tatcggcatt gttgcgggta ttgggatgct
0981 atggtttcag gatttaatgc ctggaagagc gggggcagct accaccttat ttactaacag tatttctacc
1051 ggggtaattc tggctggcgt tattcaggga gcaattgcac aaagttgggg gcactttgct gtctactggg
1121 taattgcggt tatttctgtt gtcgcattat ttttaaccgc aaaggttaaa gacgtttgaT GACGTGGACG
1191 ATAGCGGAAA GCCCGGTCAT TTGACCGGGC AAGGGGATTA ATTCATAAAC GCAGGTTGTT TTGCTTCATA
1261 AGCGGCAATG GCGTCGTCG
|
