|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR30,31-3 (BK2-1 / AK1-1)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
secM
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
secM
Search strains by all related name:
secM b0097 ECK0098 JW5007 srrA yacA
|
General information (Go to Linear View: )
|
|
Gene Name
|
secM
|
|
Alternative name
|
b0097,ECK0098,JW5007,srrA,yacA
|
|
Location, Length
|
107,705 - 108,217
(
+
)
;
2.32
min
;
513
(bp) ,
170
(aa)
|
|
Product
|
regulator of secA translation
|
|
Operon Name
|
secMA-mutT
|
|
Note
|
|
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Function
|
|
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Gene Ontology
|
GO:0005737
;
cytoplasm ( secM )
GO:0042597
;
periplasmic space ( secM )
GO:0045182
;
translation regulator activity ( secM )
|
|
PID
|
87081686
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
SECM_ECOLI
(
P62395
;
P10409; P75641
)
|
|
- Protein name
|
Secretion monitor precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=secM; Synonyms=srrA; OrderedLocusNames=b0097;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
secM
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Secretion monitor precursor
|
|
PSI-BLAST
|
Secretion monitor precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
regulator of secA translation [Escherichia coli W3110]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MSGILTRWRQ FGKRYFWPHL LLGMVAASLG LPALSNAAEP NAPAKATTRN HEPSAKVNFG QLALLEANTR
0071 RPNSNYSVDY WHQHAIRTVI RHLSFAMAPQ TLPVAEESLP LQAQHLALLD TLSALLTQEG TPSEKGYRID
0141 YAHFTPQAKF STPVWISQAQ GIRAGPQRLT
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TTTTCCGCAC AACTTATCTT CATTCGTGCT
-070 GTGGACTGCA GGCTTTAATG ATAAGATTTG TGCGCTAAAT ACGTTTGAAT ATGATCGGGA TGGCAATAAC
0001 gtgagtggaa tactgacgcg ctggcgacag tttggtaaac gctacttctg gccgcatctc ttattaggga
0071 tggttgcggc gagtttaggt ttgcctgcgc tcagcaacgc cgccgaacca aacgcgcccg caaaagcgac
0141 aacccgcaac cacgagcctt cagccaaagt taactttggt caattggcct tgctggaagc gaacacacgc
0211 cgcccgaatt cgaactattc cgttgattac tggcatcaac atgccattcg cacggtaatc cgtcatcttt
0281 ctttcgcaat ggcaccgcaa acactgcccg ttgctgaaga atctttgcct cttcaggcgc aacatcttgc
0351 attactggat acgctcagcg cgctgctgac ccaggaaggc acgccgtctg aaaagggtta tcgcattgat
0421 tatgcgcatt ttaccccaca agcaaaattc agcacgcccg tctggataag ccaggcgcaa ggcatccgtg
0491 ctggccctca acgcctcacc taaCAACAAT AAACCTTTAC TTCATTTTAT TAACTCCGCA ACGCGGGGCG
0561 TTTGAGATTT TATTATGCTA ATCAAATTGT TAACTAAAGT TTTCGGTAGT CGT
|
