|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Mol Microbiol. 1993;7(6):983-92.
Ribosome activity and modification of 16S RNA are influenced by deletion of ribosomal protein S20.
Ryden-Aulin M, Shaoping Z, Kylsten P, Isaksson LA.
(
7683367
)
|
|
|
Deletion
|
OCR27
(D)
,
OCR27-9
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rpsT
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rpsT
Search strains by all related name:
rpsT b0023 ECK0024 JW0022 sup
|
General information (Go to Linear View: )
|
|
Gene Name
|
rpsT
|
|
Alternative name
|
b0023,ECK0024,JW0022,sup
|
|
Location, Length
|
20,815 - 21,078
(
-
)
;
0.45
min
;
264
(bp) ,
87
(aa)
|
|
Product
|
30S ribosomal subunit protein S20
|
|
Operon Name
|
rpsT
|
|
Note
|
GO_component: GO:0005737 - cytoplasm; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation
|
|
Function
|
structural component; Ribosomal proteins - synthesis, modification
|
|
Gene Ontology
|
GO:0003723
;
RNA binding ( rpsT )
GO:0003735
;
structural constituent of ribosome ( rpsT )
GO:0005622
;
intracellular ( rpsT )
GO:0005840
;
ribosome ( rpsT )
GO:0006412
;
translation ( rpsT )
GO:0019843
;
rRNA binding ( rpsT )
GO:0030529
;
ribonucleoprotein complex ( rpsT )
|
|
PID
|
1786206
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
rpsT
(
EG10919
)
|
|
Number of removed
|
1 aa cleaved
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
RS20_ECOLI
(
P02378
)
|
|
- Protein name
|
30S ribosomal protein S20.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rpsT; OrderedLocusNames=b0023, c0027, z0027, ECs0026;
|
|
MMBR References
|
J Biol Chem. 1981;256:8177-8182
Nucleotide sequence of the gene for ribosomal protein S20 and its flanking regions.
Mackie, G. A.
|
Nucleic Acids Res. 1986;14:6965-6981
Structure of the DNA distal to the gene for ribosomal protein S20 in Escherichia coli K12: presence of a strong terminator and an IS1 element.
Mackie, G. A.
|
Mol Gen Genet. 1983;192(1-2):10-4.
Genetic characterization of a gene for prolipoprotein signal peptidase in Escherichia coli.
Yamagata H, Taguchi N, Daishima K, Mizushima S.
(
6227793
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MANIKSAKKR AIQSEKARKH NASRRSMMRT FIKKVYAAIE AGDKAAAQKA FNEMQPIVDR QAAKGLIHKN
0071 KAARHKANLT AQINKLA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acggcgctta tttgcacaaa tccattgaca
-070 aaagaaggct aaaagggcat attcctcggc ctttgaattg tccatataga acacatttgg gagttggacc
0001 ttggctaata tcaaatcagc taagaagcgc gccattcagt ctgaaaaggc tcgtaagcac aacgcaagcc
0071 gtcgctctat gatgcgtact ttcatcaaga aagtatacgc agctatcgaa gctggcgaca aagctgctgc
0141 acagaaagca tttaacgaaa tgcaaccgat cgtggaccgt caggctgcta aaggtctgat ccacaaaaac
0211 aaagctgcac gtcataaggc taacctgact gcacagatca acaaactggc ttaatcgcca atttgctgaa
0281 gctttgtgaa aaagcccgcg caagcgggtt tttttatgcc tgctgctttt gtgatgcgtg agagaacaca
0351 ctgccggttg ccag
|
