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PEC Original Annotations
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Essentiality
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Class
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essential
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References (PMID)
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J Bacteriol. 1997;179(20):6228-37.
Methods for generating precise deletions and insertions in the genome of wild-type Escherichia coli: application to open reading frame characterization.
Link AJ, Phillips D, Church GM.
(
9335267
)
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Deletion
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OCR33,34-1
(D)
,
OCR33,34-2
(D)
,
OCR33,35-4 (AK4-2 / BK5-2)
(D)
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Related gene (W3110 PEC)
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Gene Search
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Search MG1655 PEC by gene name:
rpsB
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Related strains
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Strains Search
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Search strains by gene name:
rpsB
Search strains by all related name:
rpsB b0169 ECK0168 JW0164
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General information (Go to Linear View: )
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Gene Name
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rpsB
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Alternative name
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b0169,ECK0168,JW0164
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Location, Length
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189,874 - 190,599
(
+
)
;
4.09
min
;
726
(bp) ,
241
(aa)
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Product
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30S ribosomal subunit protein S2
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Operon Name
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tff-rpsB-tsf
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Note
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GO_component: GO:0005737 - cytoplasm; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation
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Function
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structural component; Ribosomal proteins - synthesis, modification
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Gene Ontology
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GO:0003735
;
structural constituent of ribosome ( rpsB )
GO:0005515
;
protein binding ( rpsB )
GO:0005622
;
intracellular ( rpsB )
GO:0005840
;
ribosome ( rpsB )
GO:0006412
;
translation ( rpsB )
GO:0015935
;
small ribosomal subunit ( rpsB )
GO:0030529
;
ribonucleoprotein complex ( rpsB )
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PID
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1786365
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EC number
(KEGG Pathway)
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Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
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EcoGene
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rpsB
(
EG10901
)
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Number of removed
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1 aa cleaved
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SWISS-PROT
(
Show details
)
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Entry name(Acc.no)
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RS2_ECOLI
(
P02351
;
Q9R2E5
)
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- Protein name
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30S ribosomal protein S2.
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- Synonyms
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- Gene name
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Name=rpsB; OrderedLocusNames=b0169, c0204, z0180, ECs0171;
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MMBR References
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Mol Gen Genet. 1981;182(1):178-9.
Revised location of the Escherichia coli gene coding for ribosomal protein S2.
Lathe R, Bollen A, Herzog R.
(
7022135
)
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Mol Gen Genet. 1981;181(3):356-62.
Organization of genes in the four minute region of the Escherichia coli chromosome: evidence that rpsB and tsf are co-transcribed.
Bendiak DS, Friesen JD.
(
7017348
)
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J Mol Biol. 1975;96(3):443-53.
Late steps in the assembly of 30 S ribosomal proteins in vivo in a spectinomycin-resistant mutant of Escherichia coli.
Nashimoto H, Uchida H.
(
126327
)
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J Mol Biol. 1979;132(2):219-33.
A conditionally lethal mutation of Escherichia coli affecting the gene coding for ribosomal protein S2 (rpsB).
Bollen A, Lathe R, Herzog A, Denicourt D, Lecocq JP, Desmarez L, Lavalle R.
(
161328
)
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Nucleic Acids Res. 1981;9:4163-4172
Organization and nucleotide sequence of a new ribosomal operon in Escherichia coli containing the genes for ribosomal protein S2 and elongation factor Ts.
An, G., D. S. Bendiak, L. A. Mamelak, and J. D. Friesen.
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| Sequences |
Amino acid
FASTA format
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0001 MATVSMRDML KAGVHFGHQT RYWNPKMKPF IFGARNKVHI INLEKTVPMF NEALAELNKI ASRKGKILFV
0071 GTKRAASEAV KDAALSCDQF FVNHRWLGGM LTNWKTVRQS IKRLKDLETQ SQDGTFDKLT KKEALMRTRE
0141 LEKLENSLGG IKDMGGLPDA LFVIDADHEH IAIKEANNLG IPVFAIVDTN SDPDGVDFVI PGNDDAIRAV
0211 TLYLGAVAAT VREGRSQDLA SQAEESFVEA E
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Nucleotide
FASTA format
View sequence out neighbor 100bp
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-100 CAACACACAC GTATCGGCAC ATATTCCGGG
-070 GTGCCCTTTG GGGTCGGTAA TATGGGATAC GTGGAGGCAT AACCCCAACT TTTATATAGA GGTTTTAATC
0001 atggcaactg tttccatgcg cgacatgctc aaggctggtg ttcacttcgg tcaccagacc cgttactgga
0071 acccgaaaat gaagccgttc atcttcggtg cgcgtaacaa agttcacatc atcaaccttg agaaaactgt
0141 accgatgttc aacgaagctc tggctgaact gaacaagatt gcttctcgca aaggtaaaat ccttttcgtt
0211 ggtactaaac gcgctgcaag cgaagcggtg aaagacgctg ctctgagctg cgaccagttc ttcgtgaacc
0281 atcgctggct gggcggtatg ctgactaact ggaaaaccgt tcgtcagtcc atcaaacgtc tgaaagacct
0351 ggaaactcag tctcaggacg gtactttcga caagctgacc aagaaagaag cgctgatgcg cactcgtgag
0421 ctggagaaac tggaaaacag cctgggcggt atcaaagaca tgggcggtct gccggacgct ctgtttgtaa
0491 tcgatgctga ccacgaacac attgctatca aagaagcaaa caacctgggt attccggtat ttgctatcgt
0561 tgataccaac tctgatccgg acggtgttga cttcgttatc ccgggtaacg acgacgcaat ccgtgctgtg
0631 accctgtacc tgggcgctgt tgctgcaacc gtacgtgaag gccgttctca ggatctggct tcccaggcgg
0701 aagaaagctt cgtagaagct gagtaaTAAG GCTTGATAAC TCCCCCAAAA TAGTTCGAGT TGCAGAAAGG
0771 CGGCAAGCTC GAGAATTCCC GGGAGCTTAC ATCAGTAAGT GACCGGGATG AGCGAG
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