PEC Original Annotations
|
Essentiality
|
Class
|
non-essential
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
Deletion
|
OCR31
(D)
,
OCR31-2
(D)
,
OCR31-7
(D)
|
Related gene (W3110 PEC)
|
Gene Search
|
Search MG1655 PEC by gene name:
ppdD
|
Related strains
|
Strains Search
|
Search strains by gene name:
ppdD
Search strains by all related name:
ppdD b0108 ECK0107 JW0104
|
General information (Go to Linear View:)
|
Gene Name
|
ppdD
|
Alternative name
|
b0108,ECK0107,JW0104
|
Location, Length
|
117,109 - 117,549
(
-
)
;
2.52
min
;
441
(bp) ,
146
(aa)
|
Product
|
putative major pilin subunit
|
Operon Name
|
ppdD-hofBC
|
Note
|
prelipin peptidase dependent protein; GO_component: GO:0009289 - pilus
|
Function
|
putative enzyme; Not classified
|
Gene Ontology
|
GO:0007155
;
cell adhesion ( ppdD )
GO:0009289
;
fimbrium ( ppdD )
GO:0042995
;
cell projection ( ppdD )
|
PID
|
1786297
|
EC number
(KEGG Pathway)
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
PPDD_ECOLI
(
P36647
;
Q8KMZ6
)
|
- Protein name
|
Prepilin peptidase dependent protein D precursor.
|
- Synonyms
|
|
- Gene name
|
Name=ppdD; OrderedLocusNames=b0108;
|
Homology Analysis
|
BLAST
|
Bacteria
|
GTOP
|
ppdD
(
homologous genes of other bacterias
)
|
PDB
(database updated :
2007.02.20
)
|
PSI-BLAST
|
Chain , Structure Of The Fiber-Forming Protein Pilin At 2.6 Angstroms Resolution
|
SWISS-PROT
(database updated :
2007.02.20
)
|
BLAST
|
Prepilin peptidase-dependent protein D precursor
|
PSI-BLAST
|
Prepilin peptidase-dependent protein D precursor
|
nr
(database updated :
2007.02.20
)
|
BLAST
|
predicted major pilin subunit [Escherichia coli K12]
|
Pfam 28.0
(database updated :
2015-05
)
|
Pfam
|
|
PROSITE
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_NTER_METHYL
|
Sequences |
Amino acid
FASTA format
|
0001 MDKQRGFTLI ELMVVIGIIA ILSAIGIPAY QNYLRKAALT DMLQTFVPYR TAVELCALEH GGLDTCDGGS
0071 NGIPSPTTTR YVSAMSVAKG VVSLTGQESL NGLSVVMTPG WDNANGVTGW TRNCNIQSDS ALQQACEDVF
0141 RFDDAN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aaaaaacctc ggaatctgct ttcccgtttc
-070 gttttttgcc cctcgcctgt gctgatggcg tttgccaaag tagcgccaac caaatcaagg agcgaaacag
0001 atggacaagc aacgcggttt tacacttatc gaactgatgg tggttattgg catcattgcc attttaagcg
0071 ccattggtat tcccgcttat caaaactacc tgcgcaaagc cgcactcacc gacatgctac aaacctttgt
0141 gccttaccgt accgccgtag agttgtgcgc gctggaacat ggtggattag atacctgcga cggtggcagc
0211 aatggcattc cctcgcctac caccacccgc tatgtttcag ccatgagtgt ggcaaagggc gtggtgtcgc
0281 tgaccgggca agaaagtctc aatgggctaa gcgtcgtcat gacaccgggt tgggataacg caaacggcgt
0351 caccggctgg acgcgcaact gcaatattca aagtgacagc gcattgcagc aagcctgcga agatgtcttc
0421 cgctttgatg acgccaacta aggagcggca atgaatattc cacagctcac tgccctgtgt ctgcgttatc
0491 atggagtctt gctggatgcc agcgaagagg tggttcatgt tgcggtagtc g
|