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PEC Original Annotations
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Essentiality
|
|
Class
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non-essential
|
|
References (PMID)
|
|
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Deletion
|
OCR31
(D)
,
OCR31-2
(D)
,
OCR31-7
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
hofB
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Related strains
|
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Strains Search
|
Search strains by gene name:
hofB
Search strains by all related name:
hofB b0107 ECK0106 hopB JW0103
|
General information (Go to Linear View: )
|
|
Gene Name
|
hofB
|
|
Alternative name
|
b0107,ECK0106,hopB,JW0103
|
|
Location, Length
|
115,714 - 117,099
(
-
)
;
2.49
min
;
1386
(bp) ,
461
(aa)
|
|
Product
|
conserved protein with nucleoside triphosphate hydrolase domain
|
|
Operon Name
|
ppdD-hofBC
|
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Note
|
putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake; GO_component: GO:0009289 - pilus
|
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Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0000166
;
nucleotide binding ( hofB )
GO:0005524
;
ATP binding ( hofB )
GO:0005622
;
intracellular ( hofB )
GO:0006810
;
transport ( hofB )
GO:0017111
;
nucleoside-triphosphatase activity ( hofB )
|
|
PID
|
1786296
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
HOFB_ECOLI
(
P36645
;
P75649; Q47022
)
|
|
- Protein name
|
Protein transport protein hofB.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=hofB; Synonyms=hopB; OrderedLocusNames=b0107;
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MMBR References
|
Gene. 1994;150(1):9-15.
Escherichia coli contains a set of genes homologous to those involved in protein secretion, DNA uptake and the assembly of type-4 fimbriae in other bacteria.
Whitchurch CB, Mattick JS.
(
7959070
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MNIPQLTALC LRYHGVLLDA SEEVVHVAVV DAPSHELLDA LHFATTKRIE ITCWTRQQME GHASRTQQTL
0071 PVAVQEKHQP KAELLTRTLQ SALEQRASDI HIEPADNAYR IRLRIDGVLH PLPDVSPDAG VALTARLKVL
0141 GNLDIAEHRL PQDGQFTVEL AGNAVSFRIA TLPCRGGEKV VLRLLQQVGQ ALDVNTLGMQ PLQLADFAHA
0211 LQQPQGLVLV TGPTGSGKTV TLYSALQKLN TADINICSVE DPVEIPIAGL NQTQIHPRAG LTFQGVLRAL
0281 LRQDPDVIMI GEIRDGETAE IAIKAAQTGH LVLSTLHTNS TCETLVRLQQ MGVARWMLSS ALTLVIAQRL
0351 VRKLCPHCRR QQGEPIHIPD NVWPSPLPHW QAPGCVHCYH GFYGRTALFE VLPITPVIRQ LISANTDVES
0421 LETHARQAGM RTLFENGCLA VEQGLTTFEE LIRVLGMPHG E
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 caccggctgg acgcgcaact gcaatattca
-070 aagtgacagc gcattgcagc aagcctgcga agatgtcttc cgctttgatg acgccaacta aggagcggca
0001 atgaatattc cacagctcac tgccctgtgt ctgcgttatc atggagtctt gctggatgcc agcgaagagg
0071 tggttcatgt tgcggtagtc gatgcacctt cgcatgagct actggacgca ttgcatttcg ctaccaccaa
0141 acgtattgag atcacctgct ggacgcgcca acaaatggaa ggtcacgcca gtcgcacaca acagacattg
0211 cccgtagctg ttcaggagaa gcatcagccc aaagcagagt tgctaactcg aacgttacaa tctgcgctgg
0281 aacaacgcgc gtctgatatt catatcgaac cagcggacaa tgcctaccgc atccgcttgc gtatcgacgg
0351 cgtattgcat cctttaccgg atgtttcacc ggatgccgga gtcgcattaa ccgccagatt aaaagtgctg
0421 ggaaacctgg atattgcgga acatcgcctg ccgcaggacg ggcaattcac tgtcgaactg gcaggaaacg
0491 ccgtctcatt tcgtattgcg accttaccat gtcggggtgg tgaaaaggtg gtattaaggt tgttacagca
0561 ggtgggtcag gcactggatg tcaacacgct tggaatgcag ccgttacaac tggcggactt tgctcatgcc
0631 ttgcaacaac cacagggact ggtgctggta actggcccta ccggcagcgg caaaacggtc acgctttata
0701 gtgccctgca aaagctgaat accgctgaca ttaatatttg tagcgtcgaa gatccagttg agatccccat
0771 agccggacta aaccagacgc aaatccatcc gcgtgccgga ctcacctttc agggcgtttt gcgtgcgtta
0841 ttgcgccagg atcctgacgt catcatgatc ggagagatcc gcgatggcga aacagcagag atcgctatta
0911 aagcggcgca aactggtcac ctggtgttgt ctaccctaca cactaattcc acctgcgaaa cgctggtacg
0981 tttacagcaa atgggggtcg cccgctggat gctatcatcg gcgcttacgc tggtaatagc ccagcgtctg
1051 gtacgcaaac tttgcccaca ttgtcgccgg cagcaagggg agcccatcca cattccagac aatgtatggc
1121 catcgccgct gccccactgg caggcacccg gttgtgtaca ttgctaccac ggtttttatg gtcgtacggc
1191 cttatttgaa gttctgccca taacgccggt cattcgtcag cttatttccg ctaataccga cgttgaatcg
1261 ctggaaacgc acgcacgaca ggcgggtatg cgtacgcttt ttgaaaacgg ctgcctggcc gtagagcaag
1331 gcttaaccac ctttgaagag ttaatccgcg tactggggat gccgcatggc gagtaagcaa ctctggcgct
1401 ggcatggcat aaccggcgac ggcaatgcgc aagatgggat gctatgggca gagagccgta ctttactgct
1471 tatggcacta cagcaa
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