PEC Original Annotations
|
Essentiality
|
Class
|
non-essential
|
References (PMID)
|
Microbiology. 1997;143 (Pt 10):3149-56.
Escherichia coli is unable to produce pyrroloquinoline quinone (PQQ).
Matsushita K, Arents JC, Bader R, Yamada M, Adachi O, Postma PW.
(
9353919
)
|
|
Deletion
|
OCR32
(D)
|
Related gene (W3110 PEC)
|
Gene Search
|
Search MG1655 PEC by gene name:
gcd
|
Related strains
|
Strains Search
|
Search strains by gene name:
gcd
Search strains by all related name:
gcd b0124 ECK0123 JW0120
|
General information (Go to Linear View:)
|
Gene Name
|
gcd
|
Alternative name
|
b0124,ECK0123,JW0120
|
Location, Length
|
138,835 - 141,225
(
-
)
;
2.99
min
;
2391
(bp) ,
796
(aa)
|
Product
|
glucose dehydrogenase
|
Operon Name
|
gcd
|
Note
|
GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0006006 - glucose metabolic process; GO_process: GO:0016052 - carbohydrate catabolic process
|
Function
|
enzyme; Degradation of small molecules: Carbon compounds
|
Gene Ontology
|
GO:0005515
;
protein binding ( gcd )
GO:0005886
;
plasma membrane ( gcd )
GO:0006118
;
electron transport ( gcd )
GO:0008876
;
quinoprotein glucose dehydrogenase activity ( gcd )
GO:0016020
;
membrane ( gcd )
GO:0016021
;
integral to membrane ( gcd )
GO:0016491
;
oxidoreductase activity ( gcd )
GO:0030288
;
outer membrane-bounded periplasmic space ( gcd )
GO:0042597
;
periplasmic space ( gcd )
|
PID
|
1786316
|
EC number
(KEGG Pathway)
|
1.1.5.2
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
EcoGene
|
gcd
(
EG10369
)
|
Number of removed
|
0 aa cleaved
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
DHG_ECOLI
(
P15877
)
|
- Protein name
|
Quinoprotein glucose dehydrogenase
|
- Synonyms
|
EC 1.1.5.2, Glucose dehydrogenase [pyrroloquinoline-quinone]
|
- Gene name
|
Name=gcd; OrderedLocusNames=b0124;
|
Homology Analysis
|
BLAST
|
Bacteria
|
GTOP
|
gcd
(
homologous genes of other bacterias
)
|
PDB
(database updated :
2007.02.20
)
|
PSI-BLAST
|
Chain A, Crystal Structure Of Methanol Dehydrogenase From Hyphomicrobium Denitrificans
|
SWISS-PROT
(database updated :
2007.02.20
)
|
BLAST
|
Quinoprotein glucose dehydrogenase
|
PSI-BLAST
|
Quinoprotein glucose dehydrogenase
|
nr
(database updated :
2007.02.20
)
|
BLAST
|
glucose dehydrogenase [Escherichia coli K12]
|
Pfam 28.0
(database updated :
2015-05
)
|
Pfam
|
|
PROSITE
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
BACTERIAL_PQQ_1
BACTERIAL_PQQ_2
|
MMBR References
|
J Bacteriol. 1993;175:568-571
Characterization of the gcd gene from Escherichia coli K-12 W3110 and regulation of its expression.
Yamada, M., S. Asaoka, M. H. Saier, and Y. Yamada.
|
J Bacteriol. 1990;172(11):6308-15.
Cloning, mapping, and sequencing of the gene encoding Escherichia coli quinoprotein glucose dehydrogenase.
Cleton-Jansen AM, Goosen N, Fayet O, van de Putte P.
(
2228962
)
|
Sequences |
Amino acid
FASTA format
|
0001 MAINNTGSRR LLVTLTALFA ALCGLYLLIG GGWLVAIGGS WYYPIAGLVM LGVAWMLWRS KRAALWLYAA
0071 LLLGTMIWGV WEVGFDFWAL TPRSDILVFF GIWLILPFVW RRLVIPASGA VAALVVALLI SGGILTWAGF
0141 NDPQEINGTL SADATPAEAI SPVADQDWPA YGRNQEGQRF SPLKQINADN VHNLKEAWVF RTGDVKQPND
0211 PGEITNEVTP IKVGDTLYLC TAHQRLFALD AASGKEKWHY DPELKTNESF QHVTCRGVSY HEAKAETASP
0281 EVMADCPRRI ILPVNDGRLI AINAENGKLC ETFANKGVLN LQSNMPDTKP GLYEPTSPPI ITDKTIVMAG
0351 SVTDNFSTRE TSGVIRGFDV NTGELLWAFD PGAKDPNAIP SDEHTFTFNS PNSWAPAAYD AKLDLVYLPM
0421 GVTTPDIWGG NRTPEQERYA SSILALNATT GKLAWSYQTV HHDLWDMDLP AQPTLADITV NGQKVPVIYA
0491 PAKTGNIFVL DRRNGELVVP APEKPVPQGA AKGDYVTPTQ PFSELSFRPT KDLSGADMWG ATMFDQLVCR
0561 VMFHQMRYEG IFTPPSEQGT LVFPGNLGMF EWGGISVDPN REVAIANPMA LPFVSKLIPR GPGNPMEQPK
0631 DAKGTGTESG IQPQYGVPYG VTLNPFLSPF GLPCKQPAWG YISALDLKTN EVVWKKRIGT PQDSMPFPMP
0701 VPVPFNMGMP MLGGPISTAG NVLFIAATAD NYLRAYNMSN GEKLWQGRLP AGGQATPMTY EVNGKQYVVI
0771 SAGGHGSFGT KMGDYIVAYA LPDDVK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gaatctgtta ataaagctcg aattgtgatg
-070 acgatcacac atgttaaaac ctataattaa ttgctactaa aatattaatg aattgaaatg gtgtctcttt
0001 atggcaatta acaatacagg ctcgcgacga ttactcgtca cgctaacagc cctttttgca gcgctttgcg
0071 ggctgtatct actcattggc ggaggctggc tggtcgcgat tggcggctcc tggtactacc ctatcgctgg
0141 ccttgtgatg ctcggcgtcg cctggatgct gtggcgcagt aaacgcgccg cgctttggct atacgcagcc
0211 ctgctgctcg gcaccatgat ttggggcgtc tgggaagttg gtttcgactt ctgggcgctg actccgcgca
0281 gcgacattct ggtcttcttc ggcatctggc tgatcctgcc gtttgtctgg cgtcgcctgg tcattcctgc
0351 cagcggcgca gttgccgcac tggtggtcgc actgctgatt agcggtggta tcctgacctg ggccggattt
0421 aacgatccgc aggagatcaa cggcacctta agcgccgatg ccacacctgc tgaagctatc tcccccgtag
0491 ccgatcagga ctggcctgcc tatggtcgta atcaggaagg tcaacgcttt tcgccgctga aacaaattaa
0561 cgccgataac gtccataatc tgaaagaagc ctgggtgttc cgtactggcg atgtgaagca gccgaacgat
0631 ccgggtgaaa tcaccaatga agtgacgccg attaaagtgg gcgacaccct ttacctgtgt accgctcacc
0701 agcgcctgtt tgcgcttgat gccgccagcg gcaaagagaa atggcattac gatcctgagc tgaaaaccaa
0771 cgagtctttc cagcacgtaa cctgccgtgg tgtctcttat catgaagcca aagcagaaac cgcttcgccg
0841 gaagtgatgg cggattgccc gcgtcgtatc attcttccgg tcaatgatgg tcgactgatt gcgattaacg
0911 ctgaaaacgg caaactgtgc gaaaccttcg ccaataaagg cgtgctcaat ctgcaaagca atatgccaga
0981 caccaaaccg ggtctgtatg aaccgacttc gccaccgatt atcaccgata aaaccatcgt gatggccggt
1051 tcagttaccg ataacttctc aacccgcgaa acgtctggcg tgatccgtgg ttttgatgtc aacaccgggg
1121 agctgctgtg ggcttttgat cccggcgcga aagatccgaa cgcaatcccg tctgacgaac acacctttac
1191 ctttaactcg ccaaactcct gggcaccagc ggcctatgac gcgaagctgg atctggtcta tctgccgatg
1261 ggcgtgacca cgccggatat ctggggcggt aaccgcacac cggaacagga acgttatgcc agctcgattc
1331 tggcgctgaa tgccactacc gggaaactgg cgtggagcta ccagaccgtt caccacgacc tgtgggacat
1401 ggatcttccg gcacagccga cgctggcgga catcaccgtt aatggtcaga aagtgccagt tatttacgct
1471 ccggcgaaaa ccggcaacat ttttgtgctc gatcgtcgta atggcgaact ggtggttccg gcaccggaaa
1541 aaccggttcc ccaaggtgca gcgaaaggcg attacgtaac cccaactcaa ccgttttctg aactgagctt
1611 ccgtccgacg aaagatttga gcggtgcgga tatgtgggga gccaccatgt ttgaccaact ggtgtgccgc
1681 gtgatgttcc accagatgcg ctatgaaggc attttcaccc cgccatctga acagggtacg ctggtcttcc
1751 cgggtaacct ggggatgttc gaatggggcg ggatttccgt tgatccaaat cgtgaagtgg cgattgccaa
1821 cccaatggca ctgccgtttg tttcgaaact gatcccgcgt ggtcctggca acccgatgga gcagccgaaa
1891 gatgccaaag gcacgggtac ggaatccggc attcagccac agtacggtgt accgtatggt gtcacgctca
1961 acccgttcct ctcaccattt ggtctgccat gtaaacagcc agcatggggt tatatctcgg cgctggatct
2031 gaaaactaat gaagtggtgt ggaagaaacg tattggtacg ccgcaggaca gtatgccgtt cccgatgccg
2101 gttccggtgc cgttcaatat gggtatgccg atgctgggcg ggccaatctc cacggcgggt aacgtgctgt
2171 ttatcgccgc tacggcagat aactacctgc gcgcttacaa catgagcaac ggtgaaaaac tgtggcaggg
2241 tcgtttacca gcgggtggtc aggctacgcc aatgacctat gaagtgaatg gtaagcagta tgtggtgatc
2311 tccgcaggcg gtcacggttc atttggtacg aagatgggcg actatattgt ggcttatgcg ctgccggatg
2381 atgtgaagta agacttgctc agattgctga caacgtgcgc gttgttcatg ccggatgcgg cgtgaacgcc
2451 ttatccagcc tacaaaattg tgcaaaatca atggattgca c
|