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Update info
Last Update: February 24, 2021
Version: 4.10.7
BLAST
MG1655 & W3110
Output format :
Blastscope (2.2.8)
BLAST default format (2.2.24)
Program
blastn (DNA query vs. DNA database)
blastx (DNA query [translated into protein] vs. Protein database)
tblastx (DNA query [translated into protein] vs. DNA database [translated into protein])
blastp (Protein query vs. Protein database)
tblastn (Protein query vs. DNA database [translated into protein])
Database :
E.coli(K-12MG1655) Genome U00096.3 ( DNA ) [ 1 sequence ] ( 2014.06.17 updated)
E.coli(K-12MG1655) Genome U00096.2 ( DNA ) [ 1 sequence ] ( 2011.8.12 updated)
E.coli(K-12MG1655) Genome U00096.1 ( DNA ) [ 1 sequence ] ( 2002.11.22 updated)
E.coli(K-12MG1655) Genes in U00096.2 - all ( DNA ) [ 4422 sequences ] ( 2011.8.12 updated)
E.coli(K-12MG1655) Protein in U00096.2 - all ( Protein ) [ 4083 sequences ] ( 2011.8.12 updated)
E.coli(K-12MG1655) Genes in U00096.2 - essential ( DNA ) [ 302 sequences ] ( 2011.8.12 updated)
E.coli(K-12MG1655) Protein in U00096.2 - essential ( Protein ) [ 287 sequences ] ( 2011.8.12 updated)
E.coli(K-12MG1655) Genes in U00096.2 - non-essential ( DNA ) [ 4120 sequences ] ( 2011.8.12 updated)
E.coli(K-12MG1655) Protein in U00096.2 - non-essential ( Protein ) [ 3798 sequences ] ( 2011.8.12 updated)
E.coli(K-12MG1655) Genes in Minimal Genome of U00096.2 - all ( DNA ) [ 3113 sequences ] ( 2007.2.26 updated)
E.coli(K-12MG1655) Protein in Minimal Genome of U00096.2 - all ( Protein ) [ 3003 sequences ] ( 2007.2.26 updated)
E.coli(K-12MG1655) Genes in Minimal Genome of U00096.2 - non-essential ( DNA ) [ 2811 sequences ] ( 2007.2.26 updated)
E.coli(K-12MG1655) Protein in Minimal Genome of U00096.2 - non-essential ( Protein ) [ 2716 sequences ] ( 2007.2.26 updated)
E.coli(O157:H7EDL933) Genome ( DNA ) [ 1 sequence ] ( 2006.7.19 updated)
E.coli(O157:H7EDL933) Protein ( Protein ) [ 5324 sequences ] ( 2006.7.19 updated)
E.coli(O157:H7str.Sakai) Genome ( DNA ) [ 1 sequence ] ( 2006.3.23 updated)
E.coli(O157:H7str.Sakai) Protein ( Protein ) [ 5253 sequences ] ( 2006.3.23 updated)
E.coli(K-12W3110) Genome U009048.1 ( DNA ) [ 1 sequence ] ( 2010.09.27 updated)
NOTICE: The database list was rearranged in a different order.( Sep 11, 2008 )
Please specify the sequence data to reference.
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The following options will be set up if necessary.
Options for BLAST Search
Filter
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Expect
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
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Limit :
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Limit results by alignment length
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